IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV9-4, TRAV9D-4 and TRAV9N-4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
                                                                                                                               
                                               
                                                1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                                A   Q   S   V   T   Q   P   D       A   R   V   T   V   S   E   G   A   S   L  
  X02857     TRAV9-4*01  F   V-REGION gDNA     gct cag tca gtg aca cag ccc gat ... gct cgc gtc act gtc tct gaa gga gcc tct ctg 

                                                                                                                               
  AC003997   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008685   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  U31879     TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC005855   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC161460   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC122813   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV9-4*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  X56716     TRAV9D-4*03 (F) V-REGION cDNA                                                                                     

                                                                                                                               
  M87852     TRAV9D-4*04 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 



                                                                           ___________________CDR1-IMGT____________________    
                                               
                                                20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                                Q   L   R   C   K   Y   S   Y   S   A                           T   P   Y   L  
  X02857     TRAV9-4*01  F   V-REGION gDNA     cag ctg aga tgc aag tat tcc tac tct gcg ... ... ... ... ... ... aca cct tat ctg 

                                                                                                                               
  AC003997   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE008685   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  U31879     TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                    G                                          
  AC005855   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -g- ... ... ... ... ... ... --g --- --- --- 

                                                                                    G                                          
  AE007512   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -g- ... ... ... ... ... ... --g --- --- --- 

                                                                                    G                                          
  AE008684   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -g- ... ... ... ... ... ... --g --- --- --- 

                                                                                                                               
  AC161460   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AC122813   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                    G                                          
  IMGT000082 TRAV9-4*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -g- ... ... ... ... ... ... --g --- --- --- 

                                                                                                                            I  
  X56716     TRAV9D-4*03 (F) V-REGION cDNA                                                                              ga a-t 

                                                                                    G                                          
  M87852     TRAV9D-4*04 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- -g- ... ... ... ... ... ... --g --- --- --- 



                                                                                                               _______________C
                                               
                                                40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                F   W   Y   V   Q   Y   P   R   Q   G   L   Q   L   L   L   K   Y   Y   S   G  
  X02857     TRAV9-4*01  F   V-REGION gDNA     ttc tgg tat gtc cag tac ccg cgg cag ggg ctg cag ctg ctc ctc aag tac tat tcc gga 

                                                                                                                               
  AC003997   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008685   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  U31879     TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC005855   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC161460   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --a --- 

                                                                                                                               
  AC122813   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --a --- 

                                                                                                                               
  IMGT000082 TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --a --- 

                                                                                                                               
  IMGT000082 TRAV9-4*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                R   G   R                                                                      
  X56716     TRAV9D-4*03 (F) V-REGION cDNA     cg- g-c cgc --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  M87852     TRAV9D-4*04 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                               DR2-IMGT________________                                                        
                                               
                                                60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                        D   P   V   V   Q   G   V                       N   G   F   E   A   E  
  X02857     TRAV9-4*01  F   V-REGION gDNA     ... ... gac cca gtg gtt caa gga gtg ... ... ... ... ... aat ggc ttt gag gct gag 

                                                                                                                               
  AC003997   TRAV9-4*01  F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9-4*01  F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE008685   TRAV9-4*01  F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  U31879     TRAV9-4*01  F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AC005855   TRAV9D-4*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9D-4*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV9D-4*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                            S                  
  AC161460   TRAV9N-4*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --c a-- --c --- --- --- 

                                                                                                            S                  
  AC122813   TRAV9N-4*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --c a-- --c --- --- --- 

                                                                                                            S                  
  IMGT000082 TRAV9N-4*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --c a-- --c --- --- --- 

                                                                                                                               
  IMGT000082 TRAV9-4*02  F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  X56716     TRAV9D-4*03 (F) V-REGION cDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  M87852     TRAV9D-4*04 (F) V-REGION cDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                               
                                               
                                                80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                                F   S   K   S   N       S   S   F   H   L   R   K   A   S   V   H   W   S   D  
  X02857     TRAV9-4*01  F   V-REGION gDNA     ttc agc aag agc aac ... tct tcc ttc cac ctg cgg aaa gcc tcc gtg cac tgg agc gac 

                                                                                                                               
  AC003997   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008685   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  U31879     TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC005855   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --t --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --t --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --t --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                            Q                                  
  AC161460   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --t --- ... --- --- --- --- --- -a- --- --- --t --- --- --- --- --- 

                                                                                            Q                                  
  AC122813   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --t --- ... --- --- --- --- --- -a- --- --- --t --- --- --- --- --- 

                                                                                            Q                                  
  IMGT000082 TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --t --- ... --- --- --- --- --- -a- --- --- --t --- --- --- --- --- 

                                                    I                                                                          
  IMGT000082 TRAV9-4*02  F   V-REGION gDNA     --- -t- --- --t --- ... --- --- --- --- --- --- --- --- --t --- --- --- --- --- 

                                                                                                                               
  X56716     TRAV9D-4*03 (F) V-REGION cDNA     --- --- --- --t --- ... --- --- --- --- --- --- --- --- --t --- --- --- --- --- 

                                                    I                                                                          
  M87852     TRAV9D-4*04 (F) V-REGION cDNA     --- -t- --- --t --- ... --- --- --- --- --- --- --- --- --t --- --- --- --- --- 



                                                                       _____CDR3-IMGT__
                                               
                                                99 100 101 102 103 104 105 106 107 
                                                S   A   V   Y   F   C   A   V   S  
  X02857     TRAV9-4*01  F   V-REGION gDNA     tcg gct gtg tac ttc tgt gct gtg agc a

                                                                                   
  AC003997   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                   
  AE007512   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                   
  AE008685   TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                   
  U31879     TRAV9-4*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                            L      
  AC005855   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- c-- --- g

                                                                            L      
  AE007512   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- c-- --- g

                                                                            L      
  AE008684   TRAV9D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- c-- --- g

                                                                            L      
  AC161460   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- c-- --- -

                                                                            L      
  AC122813   TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- c-- --- -

                                                                            L      
  IMGT000082 TRAV9N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- c-- --- -

                                                                                   
  IMGT000082 TRAV9-4*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- g

                                                                        V   L       D  
  X56716     TRAV9D-4*03 (F) V-REGION cDNA     --- --- --- --- --- --- -t- c-- --- gac c

                                                                                   
  M87852     TRAV9D-4*04 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- g
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun